dmela (Biological Networks)
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This network dataset is in the category of Biological Networks
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Metadata
| Category | Sparse Networks |
| Collection | Biological Networks |
| Tags | |
| Short | protein-protein interactions |
| Vertex type | Proteins |
| Edge type | Protein interactions |
| Format | Undirected |
| Edge weights | Unweighted |
| Description | Nodes are proteins and the edges represent protein-protein interactions |
Please cite the following if you use the data:
Note that if you transform/preprocess the data, please consider sharing the data by uploading it along with the details on the transformation and reference to any published materials using it.
@inproceedings{nr,
title={The Network Data Repository with Interactive Graph Analytics and Visualization},
author={Ryan A. Rossi and Nesreen K. Ahmed},
booktitle={AAAI},
url={https://networkrepository.com},
year={2015}
}
@article{singh2008-isorank-multi,
author = {Singh, Rohit and Xu, Jinbo and Berger, Bonnie},
title = {Global alignment of multiple protein interaction networks with application to functional orthology detection},
journal = {PNAS},
year = {2008},
volume = {105},
pages = {12763-12768},
number = {35}
}
Network Data Statistics
| Nodes | 7.4K |
| Edges | 25.6K |
| Density | 0.000935753 |
| Maximum degree | 190 |
| Minimum degree | 1 |
| Average degree | 6 |
| Assortativity | -0.0465044 |
| Number of triangles | 8.7K |
| Average number of triangles | 1 |
| Maximum number of triangles | 225 |
| Average clustering coefficient | 0.0118502 |
| Fraction of closed triangles | 0.0149699 |
| Maximum k-core | 12 |
| Lower bound of Maximum Clique | 7 |
Network Data Preview
Interactive visualization of bio-dmela's graph structure
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Interactive Visualization of Node-level Properties and Statistics
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